BtaEX0020182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005525 | LHX6
Description
LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
Coordinates
chr11:93088362-93090242:-
Coord C1 exon
chr11:93090159-93090242
Coord A exon
chr11:93088937-93089008
Coord C2 exon
chr11:93088362-93088544
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCCCCCCTCCCCCAGGTG
3' ss Score
13.64
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGTACTGGAAGCATGAGAACGCCGCTCCGGCGCTGCCCGAGGGCTGCCGGCTGCCGGCCGAGGGCGGCCCCGCCACCGACCAG
Seq A exon
GTGATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGCCTTGAAGGGACCGCGCCACCCGCCATG
Seq C2 exon
GCTCAGTCGGACGCTGAGGCCCTGGCCGGCGGTCTGGACAAGGACGAGGGCCGGGCCTCTCCCTGTACGCCCAGCACGCCTTCCGTCTGCTCACCTCCCTCTGCCGCCTCCTCCGTGCCGTCCGCCGGCAAGAACATATGCTCCAGCTGCGGCCTGGAGATCCTGGACCGCTATCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005525-'0-1,'0-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.167 C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(24.1=23.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGAAGCATGAGAACGCC
R:
GGAGGTGAGCAGACGGAAGG
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development