RnoEX0049898 @ rn6
Exon Skipping
Gene
ENSRNOG00000005996 | Lhx6
Description
LIM homeobox 6 [Source:RGD Symbol;Acc:1306174]
Coordinates
chr3:15431365-15433252:-
Coord C1 exon
chr3:15433169-15433252
Coord A exon
chr3:15431928-15431999
Coord C2 exon
chr3:15431365-15431547
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTCCCCCTCCCCCAGGTG
3' ss Score
12.32
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGTACTGGAAGCATGAGAGCGCCGCCCCGGCGCTGCCCGAGGGCTGCCGGTTACCGGCGGAGGGCGGCCCCACCACCGACCAG
Seq A exon
GTGATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGTCTTGAAGGGACCGCTCCGCCTGCCATG
Seq C2 exon
GCTCAGTCAGACGCCGAGGCCTTGGCAGGCGCTCTGGACAAGGACGAAGGTAGAGCCTCCCCATGTACGCCCAGCACACCCTCTGTCTGCTCGCCGCCCTCTGCCGCCTCTTCCGTGCCGTCTGCTGGCAAGAATATCTGCTCCAGTTGCGGTCTCGAGATCCTGGACCGGTATCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005996-'0-2,'0-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.167 C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(24.1=23.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGGAAGCATGAGAGCGC
R:
AGACAGAGGGTGTGCTGGG
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]