HsaEX0036408 @ hg19
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]
Coordinates
chr2:141762904-141773484:-
Coord C1 exon
chr2:141773265-141773484
Coord A exon
chr2:141771125-141771314
Coord C2 exon
chr2:141762904-141763026
Length
190 bp
Sequences
Splice sites
3' ss Seq
AATGTGTTTATATTTTACAGATT
3' ss Score
9.16
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
TTGGATGTATTGGACAGACTGGGAGGAAGATGAAATAGATGACAGCGTGGGAAGGATTGAGAAGGCCTGGATGGATGGATTCAATCGGCAGATTTTTGTGACTTCAAAGATGCTGTGGCCAAACGGTTTAACTCTGGACTTTCACACCAACACATTATACTGGTGTGATGCCTATTACGATCATATTGAAAAAGTATTTTTGAATGGGACTCACAGGAAG
Seq A exon
ATTGTTTACAGTGGGAGAGAGTTGAACCACCCTTTCGGACTGTCGCATCATGGAAATTATGTGTTCTGGACTGATTATATGAATGGTTCCATTTTTCAACTAGATTTGATAACAAGTGAGGTGACATTGCTGAGGCATGAAAGACCACCCCTATTTGGGCTTCAGATTTATGATCCACGAAAGCAACAAG
Seq C2 exon
GTGACAATATGTGCCGAGTAAATAATGGGGGCTGTAGTACACTTTGCTTGGCTATCCCAGGAGGCCGGGTGTGTGCTTGTGCCGATAATCAACTTTTGGATGAAAATGGGACAACTTGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=64.9),PF0005812=Ldl_recept_b=PU(60.5=31.1)
A:
PF0005812=Ldl_recept_b=PD(34.2=20.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTGGATGGATGGATTCA
R:
TTATCGGCACAAGCACACACC
Band lengths:
246-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)