GgaEX0018747 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33655765-33659740:-
Coord C1 exon
chr7:33659521-33659740
Coord A exon
chr7:33657578-33657767
Coord C2 exon
chr7:33655765-33655887
Length
190 bp
Sequences
Splice sites
3' ss Seq
CTGACACCAATTAATTGCAGGTA
3' ss Score
5.99
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
CTGGATGTATTGGACAGACTGGGAAGAAGATGAAATAGATGACAGTGTGGGAAGAATTGAGAAGGCATGGATGGATGGCTACAGTCGGCAGATTTTTGTAACATCAAAGATGCTGTGGCCGAATGGTTTAACTCTGGACTATCATGCCAATGTGTTATACTGGTGTGATGCCTATTATGATCACATTGAAAGGATATTTTTGAATGGAACTGAAAGAAAG
Seq A exon
GTAATCTACAGCGGAAAAGATTTGAATCATCCTTTTGGATTATCACATCACGGAAATCATATTTACTGGACAGACTATATGAATGGATCTATTTTCCAGCTGGATCTGATCACAAGGAATGTGACACTATTAAGAAGTGAGAGACCACCTTTGTTTGGGCTTCAGATATATGACCCGCGTAAACAGCAAG
Seq C2 exon
GTAACAATGCATGTCGCGTTAACAATGGAGGCTGCAGTACTCTCTGTTTAGCCATTCCTGGAGGCAGAGTTTGTGCCTGTGCTGATAATCAGTTTTTGGAGGAAAACAGTACAACCTGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'19-29,'19-28,22-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=64.9),PF0005812=Ldl_recept_b=PU(60.5=31.1)
A:
PF0005812=Ldl_recept_b=PD(34.2=20.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGATGGATGGCTACAG
R:
TCAGCACAGGCACAAACTCTG
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]