GgaEX0018745 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33657578-33662348:-
Coord C1 exon
chr7:33662168-33662348
Coord A exon
chr7:33659521-33659740
Coord C2 exon
chr7:33657578-33657767
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTATAATTTAATAGCTG
3' ss Score
6.04
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATCTCGATAATGTAGAAGGTATAGCAGTGGACTGGATTGGAAATAATCTTTATTGGACAAACGATGGCCACAGGAAAACAATCTCTGTAGCCAGACTGGAAAAAGCTGCTCAGAGTCGGAAAACATTGCTAGAGGGAGACATGTCTCACCCTAGAGGAATTGTTGTTGATCCTGTCAATGG
Seq A exon
CTGGATGTATTGGACAGACTGGGAAGAAGATGAAATAGATGACAGTGTGGGAAGAATTGAGAAGGCATGGATGGATGGCTACAGTCGGCAGATTTTTGTAACATCAAAGATGCTGTGGCCGAATGGTTTAACTCTGGACTATCATGCCAATGTGTTATACTGGTGTGATGCCTATTATGATCACATTGAAAGGATATTTTTGAATGGAACTGAAAGAAAG
Seq C2 exon
GTAATCTACAGCGGAAAAGATTTGAATCATCCTTTTGGATTATCACATCACGGAAATCATATTTACTGGACAGACTATATGAATGGATCTATTTTCCAGCTGGATCTGATCACAAGGAATGTGACACTATTAAGAAGTGAGAGACCACCTTTGTTTGGGCTTCAGATATATGACCCGCGTAAACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'18-28,'18-27,19-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(26.8=18.0),PF0005812=Ldl_recept_b=WD(100=72.1),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=64.9),PF0005812=Ldl_recept_b=PU(60.5=31.1)
C2:
PF0005812=Ldl_recept_b=PD(34.2=20.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAACGATGGCCACAGGAA
R:
CGCGGGTCATATATCTGAAGCC
Band lengths:
305-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]