DreEX6037454 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36590109-36603486:+
Coord C1 exon
chr9:36590109-36590289
Coord A exon
chr9:36600257-36600476
Coord C2 exon
chr9:36603297-36603486
Length
220 bp
Sequences
Splice sites
3' ss Seq
AGTTATGGTTGTGTTTACAGTTG
3' ss Score
5.51
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATCTGGATAATGTAGAGGGGATTTCTGTGGATTGGATTGGGAATAATTTGTACTGGACCAATGATGGCTACAGAAAAACCATCAGCGTGGCCAGGCTGGAGCGGGCATCTGAAACCAGGAAGACTCTTCTCGAGGGAGACATGTCTCATCCCAGAGCCATAGTGGTGGATCCTCTCAACAG
Seq A exon
TTGGATGTACTGGACTGATTGGGAAGAGGATGAAGTGAACGACAGCATTGGGAGAATAGAGAAAGCCTGGATGGATGGATCTAATAGGAAAATATTTGTCACATCAAACATGCTCTGGCCTAATGGACTCACTCTGGATCATGGCACCAGTACCATGTACTGGTGTGATGCCTATTATGATCACATTGAAAAGATTTACCTCAATGGCACTGGCAGAATG
Seq C2 exon
GTTGTGTACAGTGGCAGGGAACTCAATCACCCGTTTGGGATTGCGCAGTACCAGAATTCCATCTTCTGGACGGAGTACATGAACGCCTCCATCTTCCAGCTGGATCTGCTCTCTGCTGAAGTCAGTCTGCTGAGAAGCGAACGGCCTCCTCTGTTTGGGCTCCGAGTTTATGATGCACAAAGCCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(26.8=18.0),PF0005812=Ldl_recept_b=WD(100=72.1)
A:
PF0005812=Ldl_recept_b=WD(100=63.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAAACCATCAGCGTGGC
R:
CCAGCTGGCTTTGTGCATCAT
Band lengths:
301-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]