HsaEX0037057 @ hg38
Exon Skipping
Gene
ENSG00000150556 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
Coordinates
chr2:149118174-149130953:+
Coord C1 exon
chr2:149118174-149118265
Coord A exon
chr2:149119103-149119163
Coord C2 exon
chr2:149130883-149130953
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTCTTTTCACTCAGATT
3' ss Score
8.14
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGTGTGTGTGCTGGGGCTGGGGCGGCTACATAGCTGTGACTACCAGGGGGTGCAGTCTCTGGGGACCACCACTACCGAGGCTGGGTACCATG
Seq A exon
ATTATCGCGGAACACCTGCCCATTAATCTTGACCCTGTTAAAACAATAACTGCCTATCCAG
Seq C2 exon
ATATGCCACACTTCTGCCTGCTGTTGGCAACCCTCCTGGACTAGGCTGCTCTTGTTAATCACATGGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150556-'7-11,'7-10,8-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGTGCTGGGGCTG
R:
CTAGTCCAGGAGGGTTGCCAA
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development