HsaEX0037058 @ hg38
Exon Skipping
Gene
ENSG00000150556 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
Coordinates
chr2:149119103-149205404:+
Coord C1 exon
chr2:149119103-149119163
Coord A exon
chr2:149130883-149130953
Coord C2 exon
chr2:149205253-149205404
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTCATGTTCATTTGTTTAGATA
3' ss Score
7.12
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
ATTATCGCGGAACACCTGCCCATTAATCTTGACCCTGTTAAAACAATAACTGCCTATCCAG
Seq A exon
ATATGCCACACTTCTGCCTGCTGTTGGCAACCCTCCTGGACTAGGCTGCTCTTGTTAATCACATGGATGTT
Seq C2 exon
ATATAAGAGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCTCTGTCACGCTCTCGCTATAGCTGTTGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCAAGAACATCAACTTCTATAATGTGAGGCCTCCTCTCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150556_MULTIEX1-2/9=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATCGCGGAACACCTGCC
R:
GCAAATGCCCAGCTTTCTGAG
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development