HsaEX0037058 @ hg19
Exon Skipping
Gene
ENSG00000150556 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:27018]
Coordinates
chr2:149894981-150017349:+
Coord C1 exon
chr2:149894981-149895315
Coord A exon
chr2:149987397-149987467
Coord C2 exon
chr2:150017278-150017349
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTCATGTTCATTTGTTTAGATA
3' ss Score
7.12
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
ACTTCCTGAGCCGGGCTGGCTGGGTGGGAACAGGCTCCTTGCCGCCTCCCCAGCGCTGGCCACTACCACACTGCCGCCCGCCTGGGCCTCCTTTCAACCTCGTGGTGGAGCCCTGCGGTTTCCCAGCGGAGCCGGGCCCGGGGCTGCTCCCTCGCGGGCGAGGCTCACCTGTCCCGGCCCGGCCCCCTCCCGCGCCCCAGGTGGTTCAGGGCAGGGAGGAGCCGCGCCCCGCCCCGCGCGGTAGCAGCCAACGCCGGCCCCAGGCGGGTGCGCTGGGAGCCTGGGCCGGGAGCCGGGTGAGGGCGCCGAGAGGCTCGGTGGGCGCGGGCGGCGAG
Seq A exon
ATATGCCACACTTCTGCCTGCTGTTGGCAACCCTCCTGGACTAGGCTGCTCTTGTTAATCACATGGATGTT
Seq C2 exon
GCTGATTACTCTGAGTGCAAACCTTTTCACTGTTCCAGAGAGGAGCCTGACAACCACATTCTCCTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150556-'1-16,'1-10,7-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGGCAGGGAGGAGC
R:
GTCAGGCTCCTCTCTGGAACA
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)