HsaEX0037061 @ hg19
Exon Skipping
Gene
ENSG00000150556 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:27018]
Coordinates
chr2:149987397-150061918:+
Coord C1 exon
chr2:149987397-149987467
Coord A exon
chr2:150017278-150017349
Coord C2 exon
chr2:150061767-150061918
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTATCTCTGGTAGGCT
3' ss Score
8.25
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATATGCCACACTTCTGCCTGCTGTTGGCAACCCTCCTGGACTAGGCTGCTCTTGTTAATCACATGGATGTT
Seq A exon
GCTGATTACTCTGAGTGCAAACCTTTTCACTGTTCCAGAGAGGAGCCTGACAACCACATTCTCCTTCTCAAG
Seq C2 exon
ATATAAGAGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCTCTGTCACGCTCTCGCTATAGCTGTTGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCAAGAACATCAACTTCTATAATGTGAGGCCTCCTCTCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150556_MULTIEX1-6/9=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCCACACTTCTGCCTGC
R:
GCAAATGCCCAGCTTTCTGAG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)