HsaEX0037064 @ hg19
Exon Skipping
Gene
ENSG00000150556 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:27018]
Coordinates
chr2:150043940-150061918:+
Coord C1 exon
chr2:150043940-150044093
Coord A exon
chr2:150045172-150045245
Coord C2 exon
chr2:150061767-150061918
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCATTTGTATTACAGCTA
3' ss Score
8.41
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
ATGTGAAAGGCATTGTACAGAAGAAGATGAGAATCACAGTAAACCAAACAAAGGAAATGCAGAAGAGATATTTTCAGCTGAATATTGGAAAGTAAGATTCCCTGCGAGCAGGATCTCAGGCAACGTCAATGAACAACATGAAGCCTGACACATT
Seq A exon
CTAATTAGTCTAAGGAAAATGGTGACAGAGGATATATTCCGTAACGTCTCAGGAGGTCGCCTGGCTCCAGAGAG
Seq C2 exon
ATATAAGAGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCTCTGTCACGCTCTCGCTATAGCTGTTGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCAAGAACATCAACTTCTATAATGTGAGGCCTCCTCTCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150556_MULTIEX1-9/9=8-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGATTCCCTGCGAGCAG
R:
GCAAATGCCCAGCTTTCTGAG
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)