RnoEX6016733 @ rn6
Exon Skipping
Gene
ENSRNOG00000004614 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:RGD Symbol;Acc:1562767]
Coordinates
chr3:35340552-35417681:+
Coord C1 exon
chr3:35340552-35340640
Coord A exon
chr3:35386212-35386283
Coord C2 exon
chr3:35417622-35417681
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGTCCTTTTCTCTCTGGTAGACT
3' ss Score
7.63
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AATAATCCCTGATTACAGCCATGCTGAGCGGGTAAATAGCAAAGGGCAGTTGGAATTTTGGTGTCAAAGGCCTGCTTTCTAGAACTCTG
Seq A exon
ACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGACTGACTACCAGGCTGTCTTTCTTAAG
Seq C2 exon
GTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGGAGGAAGACTTGGGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004614-'2-9,'2-5,5-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGATTACAGCCATGCT
R:
TCCTCACCCAAGTCTTCCTCC
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]