HsaEX0037061 @ hg38
Exon Skipping
Gene
ENSG00000150556 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
Coordinates
chr2:149130883-149205404:+
Coord C1 exon
chr2:149130883-149130953
Coord A exon
chr2:149160764-149160835
Coord C2 exon
chr2:149205253-149205404
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTATCTCTGGTAGGCT
3' ss Score
8.25
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATATGCCACACTTCTGCCTGCTGTTGGCAACCCTCCTGGACTAGGCTGCTCTTGTTAATCACATGGATGTT
Seq A exon
GCTGATTACTCTGAGTGCAAACCTTTTCACTGTTCCAGAGAGGAGCCTGACAACCACATTCTCCTTCTCAAG
Seq C2 exon
ATATAAGAGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCTCTGTCACGCTCTCGCTATAGCTGTTGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCAAGAACATCAACTTCTATAATGTGAGGCCTCCTCTCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150556_MULTIEX1-6/9=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCCACACTTCTGCCTGC
R:
GCAAATGCCCAGCTTTCTGAG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development