HsaEX0037864 @ hg19
Exon Skipping
Gene
ENSG00000173838 | MARCH10
Description
membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:26655]
Coordinates
chr17:60821737-60837367:-
Coord C1 exon
chr17:60837196-60837367
Coord A exon
chr17:60824226-60824336
Coord C2 exon
chr17:60821737-60821886
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAGGGTTTTTTCCAAAGCAGAGT
3' ss Score
2.25
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGTTCTAGTGAGGAGGATGCTCTAACTGAACCAAGGTCATCTATCAAGATATCTGCATTTAAGTGTGACTCCAAACTTCCAGCAATTGACCAAACATCAGTCAAGCAGAAACATAAAAGTACCATGACTGTAAGGAAAGCAGAGAAAGTGGACCCCAGCGAACCCTCTCCAG
Seq A exon
AGTCAGAGCCGACTTGGTGGAATAAACCGGAAACAGACCTCGGAGGACCTTCTGGCTGGTGCAGTCTGGGGAAGAAAGGTCCCATGAGCAGAAGCATCCCTCCCTGTGAAG
Seq C2 exon
ACCAAGCACCAATGGTTTTATTAAGAAAGAGGAAGCCAAACCTGAGGAGATTTACAGTCAGCCCAGAATCGCACAGCCCGAGAGCATCTGGGGACAGAAGCAGACAGAAACAGCAGTGGCCTGCAAAGGTGCCGGTTCCCAGGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173838_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=0.921 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCTCTAACTGAACCAAGGT
R:
TTCTGTCCCCAGATGCTCTCG
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)