HsaEX0037864 @ hg38
Exon Skipping
Gene
ENSG00000173838 | MARCH10
Description
membrane associated ring-CH-type finger 10 [Source:HGNC Symbol;Acc:HGNC:26655]
Coordinates
chr17:62744376-62760006:-
Coord C1 exon
chr17:62759835-62760006
Coord A exon
chr17:62746865-62746975
Coord C2 exon
chr17:62744376-62744528
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAGGGTTTTTTCCAAAGCAGAGT
3' ss Score
2.25
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGTTCTAGTGAGGAGGATGCTCTAACTGAACCAAGGTCATCTATCAAGATATCTGCATTTAAGTGTGACTCCAAACTTCCAGCAATTGACCAAACATCAGTCAAGCAGAAACATAAAAGTACCATGACTGTAAGGAAAGCAGAGAAAGTGGACCCCAGCGAACCCTCTCCAG
Seq A exon
AGTCAGAGCCGACTTGGTGGAATAAACCGGAAACAGACCTCGGAGGACCTTCTGGCTGGTGCAGTCTGGGGAAGAAAGGTCCCATGAGCAGAAGCATCCCTCCCTGTGAAG
Seq C2 exon
CAGACCAAGCACCAATGGTTTTATTAAGAAAGAGGAAGCCAAACCTGAGGAGATTTACAGTCAGCCCAGAATCGCACAGCCCGAGAGCATCTGGGGACAGAAGCAGACAGAAACAGCAGTGGCCTGCAAAGGTGCCGGTTCCCAGGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173838_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.715 A=0.937 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGAGGATGCTCTAACTGA
R:
TGCGATTCTGGGCTGACTGTA
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development