HsaALTA1047039-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173838 | MARCH10
Description
membrane associated ring-CH-type finger 10 [Source:HGNC Symbol;Acc:HGNC:26655]
Coordinates
chr17:62749976-62760006:-
Coord C1 exon
chr17:62759835-62760006
Coord A exon
chr17:62750457-62750536
Coord C2 exon
chr17:62749976-62750456
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTCTTTTTCTTTTGTGCAGGTG
3' ss Score
10.34
Exon sequences
Seq C1 exon
AGTTCTAGTGAGGAGGATGCTCTAACTGAACCAAGGTCATCTATCAAGATATCTGCATTTAAGTGTGACTCCAAACTTCCAGCAATTGACCAAACATCAGTCAAGCAGAAACATAAAAGTACCATGACTGTAAGGAAAGCAGAGAAAGTGGACCCCAGCGAACCCTCTCCAG
Seq A exon
GTGGCAGCAGCAAGCACCCCCTGTTCTGTGTTGAATACACCCCTTACTGCTCCGTCTTTGCTTTCTCCCCTGTCCTGCAG
Seq C2 exon
CCCAATACCAATTACTGCTGCCTCCTCCTGCCACTAGTGCCACCTGCCTCCCCAGTGGCCCAGGAACCTCCTGACTGTCCTCTCCCTCTGGTTACCGTTCCCTCCTTCACAAGCACCGCTTCCACCTCCCCGGACCCCGTGCCCGAGTCCCCCGCCGTGCTGTGCTACTTCCCCATCTCCTGCCCCACTCCGGCTGAGACCCCTGTGCTGTGCCTTCAGGGCCCCAGAAGGCCCAGTAGGATTTACCTCATGTGGTAAGTCACTCTTGCAAGGCACACAGCACAGCGCAGTCGGGGAGAGGGGACTTCGGGCTTCCGGAAGGCAGGTGGACAGGAGAGGGGCCAGAGGCCACACCAAGAACAATACCAGGCGGCGTGGTGTTCGGGGGAGCAGGAAGATGGGACAGCGTGGCCACTGCACTGGGGCTGCACCTTCTAGCGCCAAAGGAGCGAGCGACCAATAAAATCCCATCCTCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173838-21-21,21-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.715 A=NA C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAACATCAGTCAAGCAGA
R:
CAGAGGGAGAGGACAGTCAGG
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains