HsaALTA1047038-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173838 | MARCH10
Description
membrane associated ring-CH-type finger 10 [Source:HGNC Symbol;Acc:HGNC:26655]
Coordinates
chr17:62744376-62760006:-
Coord C1 exon
chr17:62759835-62760006
Coord A exon
NA
Coord C2 exon
chr17:62744376-62744525
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GACTTTGCATCTTTCAGCAGACC
3' ss Score
6.9
Exon sequences
Seq C1 exon
AGTTCTAGTGAGGAGGATGCTCTAACTGAACCAAGGTCATCTATCAAGATATCTGCATTTAAGTGTGACTCCAAACTTCCAGCAATTGACCAAACATCAGTCAAGCAGAAACATAAAAGTACCATGACTGTAAGGAAAGCAGAGAAAGTGGACCCCAGCGAACCCTCTCCAG
Seq A exon
NA
Seq C2 exon
ACCAAGCACCAATGGTTTTATTAAGAAAGAGGAAGCCAAACCTGAGGAGATTTACAGTCAGCCCAGAATCGCACAGCCCGAGAGCATCTGGGGACAGAAGCAGACAGAAACAGCAGTGGCCTGCAAAGGTGCCGGTTCCCAGGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173838-21-26,21-25-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.715 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAGAAAGTGGACCCCA
R:
GCGATTCTGGGCTGACTGTAA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains