HsaEX0038051 @ hg19
Exon Skipping
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138614016-138614818:+
Coord C1 exon
chr5:138614016-138614097
Coord A exon
chr5:138614254-138614429
Coord C2 exon
chr5:138614740-138614818
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTATTCACTGCTAGATC
3' ss Score
7.77
5' ss Seq
TAGGTATCT
5' ss Score
4.28
Exon sequences
Seq C1 exon
GATGACTTGAAAGTAGGGCATCCTTCACCCATCTGAAGGGAGGAAATAGTGGCAGGTGACAGTCTGCATGTGCAGTTTTCAG
Seq A exon
ATCCCAATCGCAGTGCTTGGCACATGGCAGGACCTCCCTGAATGTTGCATAAAACAACTGAAAACACAGAAGGGGATTCCTGTTAAAGGGTTTGACAACAGGGTCTGCAATTAGTGCTTCCACGCCTGTTTTGCAGTCAATATTCAACTGATACGTCTTCTACCTGGAGTGCCTAG
Seq C2 exon
ATGCCTTCACCTGAATGACATCTACCTCCATCAGGACCCCAGATGTCTGACAGCCCTGTGTGACACCAAGATAAGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479_MULTIEX1-2/6=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACTTGAAAGTAGGGCATCCT
R:
ATCTTGGTGTCACACAGGGCT
Band lengths:
154-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)