HsaEX0038050 @ hg19
Exon Skipping
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138611810-138614818:+
Coord C1 exon
chr5:138611810-138611839
Coord A exon
chr5:138614016-138614097
Coord C2 exon
chr5:138614740-138614818
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGTCTTCCTTTTTAGGAT
3' ss Score
13.23
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGAGGCTGGCTGTGGCAGATGCAACTGCAG
Seq A exon
GATGACTTGAAAGTAGGGCATCCTTCACCCATCTGAAGGGAGGAAATAGTGGCAGGTGACAGTCTGCATGTGCAGTTTTCAG
Seq C2 exon
ATGCCTTCACCTGAATGACATCTACCTCCATCAGGACCCCAGATGTCTGACAGCCCTGTGTGACACCAAGATAAGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479_MULTIEX1-1/6=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGTGGCAGATGCAAC
R:
GTTACTTATCTTGGTGTCACACAGG
Band lengths:
103-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)