MmuEX7034665 @ mm10
Exon Skipping
Gene
ENSMUSG00000097769 | Snhg4
Description
small nucleolar RNA host gene 4 [Source:MGI Symbol;Acc:MGI:4937091]
Coordinates
chr18:35554427-35558316:+
Coord C1 exon
chr18:35554427-35554461
Coord A exon
chr18:35556616-35556691
Coord C2 exon
chr18:35557337-35558316
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTTTTTTTTAGGAT
3' ss Score
13.77
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
TGGCCAGCTGCCAGTTTGAGGCGATGTCTGCCCTG
Seq A exon
GATGACTTGAAAGTAGGGTGGTCTTCACCAGGCTAAAAGAAGTAATGATCCATAACAGGGTGCACTGTGGTTCTAG
Seq C2 exon
ATCTGAATGAGATCGCGTTCATCAGGACTTCAGGTTTCTGACAACACTGTTTTGAGTAATGTATATATGGTCTCTGTAATGTAGAGGTACTTCAGTTCAGATGGGGAAAGTTGAGTTTGCTTTAGAGGATTGCAGAACTGTGATGTAATTCCAGAGAATGCTTGTCAAGTCCAGCTACGCTTTGGCAGATGAGGCAGTGAGAGAGCTCACCCATGGCCACTGAGCTGCATATCTAGCTATAATTTTTAGAGGGACTAGATGGTGTCTGTGGACTACATGTGGCCGGCTACTTGCTAATTAAAAAGGGATTTCAGACATCTATGTGGATGGTAGCCATCTTAGGACAGCTTAGAATGTTTAGGATATTGCTTTTTAAAAGCAAAGTTTTATATAAAGGTTCCTATAATGGCCCAGATAGTAAATATTAATACTGTCTTTGGTTTTGCAACTATGTTGCTTTTGTGTGAAAAATAGTGAACTTGGTTTTTTTGTGTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097769-'1-3,'1-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGAGGCGATGTCTGCC
R:
ACATCACAGTTCTGCAATCCTCT
Band lengths:
170-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types