HsaEX0039178 @ hg38
Exon Skipping
Gene
ENSG00000204520 | MICA
Description
MHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:HGNC:7090]
Coordinates
chr6:31400054-31410797:+
Coord C1 exon
chr6:31400054-31400251
Coord A exon
chr6:31402157-31402356
Coord C2 exon
chr6:31410543-31410797
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTATTTTAAAGGCT
3' ss Score
9.95
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CCGGATCCGAATCCTCCGCGGTGCTGTTTCAAGAGAGCCGGATTCCAGATCACGCTCCAGCCCGGACTCGGAATTCCTGCCCTGCGGGTCTGCATTTTCATAACGGGCAGGTGTGAGTGCCCTGCAGCTGGAGACCAGAAGCCTGAAGGCAGCTCGGCCCTCCCCAGCCCACAGCGCCGTTATTCCGTTTCTATATCA
Seq A exon
GCTAGTCAAGTGAAACAGTGGGAGTGAAGAAGAAACAAAGACATCTATAACTGGTTGTGATCAATTAGTTGTAAACACTGCACTCAGACCAGCCTGGGAAGATTTTAAGGATATGGTGTGGTCTGATGGGTTCCAAGGCAGAGGTTACAATAGCCTGGAAGAGGGAGACTGCTTAGGCAGTGGCATCCTGGTGGGATAGG
Seq C2 exon
AGCCCCACAGTCTTCGTTATAACCTCACGGTGCTGTCCTGGGATGGATCTGTGCAGTCAGGGTTTCTTGCTGAGGTACATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAATGCAGGGCAAAGCCCCAGGGACAGTGGGCAGAAGATGTCCTGGGAAATAAGACATGGGACAGAGAGACCAGGGACTTGACAGGGAACGGAAAGGACCTCAGGATGACCCTGGCTCATATCAAGGACCAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204520_MULTIEX2-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.149
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0012913=MHC_I=PU(50.3=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTTCAAGAGAGCCGGAT
R:
TTTCTGCCTGTCATAGCGCAG
Band lengths:
295-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development