HsaEX0039178 @ hg19
Exon Skipping
Gene
ENSG00000204520 | MICA
Description
MHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:7090]
Coordinates
chr6:31368479-31371479:+
Coord C1 exon
chr6:31368479-31368540
Coord A exon
chr6:31369934-31370133
Coord C2 exon
chr6:31371222-31371479
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTATTTTAAAGGCT
3' ss Score
9.95
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TTTCTTTTCCGGACCCTGCAGTGGCGCCTAAAGTCTGAGAGAGGGAAGTCGCCTCTGTGCTC
Seq A exon
GCTAGTCAAGTGAAACAGTGGGAGTGAAGAAGAAACAAAGACATCTATAACTGGTTGTGATCAATTAGTTGTAAACACTGCACTCAGACCAGCCTGGGAAGATTTTAAGGATATGGTGTGGTCTGATGGGTTCCAAGGCAGAGGTTACAATAGCCTGGAAGAGGGAGACTGCTTAGGCAGTGGCATCCTGGTGGGATAGG
Seq C2 exon
GTCTCCAGCCCACTGGAATTTTCTCTTCCAAGCGTGGCCCCGCCCTCTCCGCTCGTGATTGGCCCTAAGTTCCGGGCCCCAGTTTCATTGGATGAGCGGTCGGGGGACCGGGCCAGGTGACTAAGTTTCCGCGGCGCCTTCTCCCCGGCCACTGCTTGAGCCGCTGAGAGGGTGGCGACGTCGGGGCCATGGGGCTGGGCCCGGTCTTTCTGCTTCTGGCTGGCATCTTCCCTTTTGCACCTCCGGGAGCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204520-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0012913=MHC_I=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTTTTCCGGACCCTGCAG
R:
AAAAGGGAAGATGCCAGCCAG
Band lengths:
298-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)