HsaEX0039179 @ hg19
Exon Skipping
Gene
ENSG00000204520 | MICA
Description
MHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:7090]
Coordinates
chr6:31368479-31378574:+
Coord C1 exon
chr6:31368479-31368540
Coord A exon
chr6:31371222-31371479
Coord C2 exon
chr6:31378320-31378574
Length
258 bp
Sequences
Splice sites
3' ss Seq
CGCCTTCTAAATCTCCCCAGGTC
3' ss Score
10.19
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTCTTTTCCGGACCCTGCAGTGGCGCCTAAAGTCTGAGAGAGGGAAGTCGCCTCTGTGCTC
Seq A exon
GTCTCCAGCCCACTGGAATTTTCTCTTCCAAGCGTGGCCCCGCCCTCTCCGCTCGTGATTGGCCCTAAGTTCCGGGCCCCAGTTTCATTGGATGAGCGGTCGGGGGACCGGGCCAGGTGACTAAGTTTCCGCGGCGCCTTCTCCCCGGCCACTGCTTGAGCCGCTGAGAGGGTGGCGACGTCGGGGCCATGGGGCTGGGCCCGGTCTTTCTGCTTCTGGCTGGCATCTTCCCTTTTGCACCTCCGGGAGCTGCTGCTG
Seq C2 exon
AGCCCCACAGTCTTCGTTATAACCTCACGGTGCTGTCCTGGGATGGATCTGTGCAGTCAGGGTTTCTTGCTGAGGTACATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAATGCAGGGCAAAGCCCCAGGGACAGTGGGCAGAAGATGTCCTGGGAAATAAGACATGGGACAGAGAGACCAGGGACTTGACAGGGAACGGAAAGGACCTCAGGATGACCCTGGCTCATATCAAGGACCAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204520-'1-7,'1-1,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.025 C2=0.208
Domain overlap (PFAM):
C1:
NA
A:
PF0012913=MHC_I=PU(0.1=0.0)
C2:
PF0012913=MHC_I=PU(50.3=98.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTTTTCCGGACCCTGCAG
R:
GGTCCTTGATATGAGCCAGGG
Band lengths:
308-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)