HsaEX0040443 @ hg19
Exon Skipping
Gene
ENSG00000122085 | MTERFD2
Description
MTERF domain containing 2 [Source:HGNC Symbol;Acc:28785]
Coordinates
chr2:242029395-242041747:-
Coord C1 exon
chr2:242041668-242041747
Coord A exon
chr2:242033692-242033847
Coord C2 exon
chr2:242029395-242029459
Length
156 bp
Sequences
Splice sites
3' ss Seq
GGTGCTTTTGTTTTCTCCAGCAG
3' ss Score
7.45
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAAGGACGGGGGAGGACCGCTGCTTCCGGCGCCGTAACTGCTGCCATCTTCTCCGCGCTATGGCTGCGTTCGGCCGTCAG
Seq A exon
CAGCCTCGTCTTACAGCGTGACTGCAAAGAAAAAGACTTTTGTTTTGCAAAAGAAAAGCAGCTCGGTGACTCCGTCCACATCGCCACAGTTGAGTCAGATGGCAGTGGCAGTCCTTTGCCAGTGGAAGGAGTTCCTGCTAAGGGGAGGTGCAGGAG
Seq C2 exon
GACTAATTTATTATTGTGCAACTGCCAGTCCTGCGCATTCCAGCTACGCTAAGCGCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122085_MULTIEX1-6/9=C1-9
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
PF025369=mTERF=PD(20.7=43.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACGGGGGAGGACC
R:
GTAGCTGGAATGCGCAGGAC
Band lengths:
127-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)