HsaINT0105951 @ hg19
Intron Retention
Gene
ENSG00000122085 | MTERFD2
Description
MTERF domain containing 2 [Source:HGNC Symbol;Acc:28785]
Coordinates
chr2:242033692-242035853:-
Coord C1 exon
chr2:242034545-242035853
Coord A exon
chr2:242033848-242034544
Coord C2 exon
chr2:242033692-242033847
Length
697 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GGTGCTTTTGTTTTCTCCAGCAG
3' ss Score
7.45
Exon sequences
Seq C1 exon
TATGCATACTTCAGGATGGGAATTAAGCATCCAGACATTGTAAAGAGTGAGTACTTGCAGTATTCACTAACCAAGATTAAGCAGAGACACATTTACCTGGAGCGCCTGGGACGGTACCAAACCCCTGATAAGAAGGGGCAGACACAGATCCCTAACCCATTGCTCAAGGACATTCTCAGAGTTTCAGAAGCTGAGTTTTTGGCCAGGACAGCCTGTACTTCTGTTGAGGAGTTTCAAGTTTTTAAGAAGCTCCTGGCTCGGGAGGAGGAGGAGTCTGAGAGCAGCACATCTGATGACAAAAGGGCAAGTCTGGATGAGGATGAGGATGACGATGATGAGGAGGACAATGATGAGGATGACAATGATGAGGATGACGATGATGAGGACGACGACGAGGCGGAGGACAATGATGAGGATGAGGACGACGACGAGGAGGAATAGCTGTGATGGAAGGACTAGAGCGAAAGGGCCCAGAGATATCAAGGAAGCTTTTCATTCTCTTAAAGCTTTTGGGTCCTTTACTTGAATCTTCTCAAGTTATTTTTTATTCTAAAACTGGTCTCTTGATGAAAAAAATTATAAGTCACCTGAGAGGCAGACAGATCAAACCAAACAGGAAACAGGAAATGCATGTTTGATCTGTTGTCACGTGTCTGTGGGGAGGGCCCTGTCCCATCCTGAATAAGATACTTATGTTGAGCTATTCACATCAAGGGGACTCAATATATCAACAATTGGTTTTATTTTTTTCTCTTTTGAATATGTTGGTGATAATTCCGTGACAGTTGGAAGATGGGGTTCATTCTTCCGGTTCAGGAATCACTATGTATTTCCTTCTTGTGATAAAAATAAAATTACGAGAAGGCAATGTGAGGTTTTAGTACATCATAGCACTTTATTTTATGAAAACATGTAGCAGATTTTCCACAAAAATGCTTATTTTTAATCCAAAAGTATATTGCTTCATAATGGTATTCAGTGCACAGCAGAGTAAAAGAAGTTAATTCATGATGTACTGGTTAATTTTGCATGGCTTCTTAAGGCCAGCAAAATGCTGGCAGTTTTCTTTATCTTTGTGAAGAACAGGCCCTTCCTGTTTGGGGAAGTTGGCTTTTATGTCAGCTCTTGGCCAGTGGTCACTTCCAAGCCTGGTGTCTCCGGCCCTGTAGTCTGTAGTGCCAGACTGTGCTGGCCTGGAGAGTGCTGGGGCAGGTGGAGGCCAGGGAATGGTCCCATACAGTTATCTCCCCTGCCCTGGTTACAGACAGCTTCGAGAACCAGAGGAGAAGAGCATAGGGTCATGGAGCAG
Seq A exon
GTGGGCTGAAGCCAGGGCCACAGGGAGCAATCCGTGACCCCCCAAGGTGGGTGTGGGGGGGGGGGGGGGCGTGTCACCTTAGGGAACTCAATGAGTCCGAAGAACAATTTGAAATGTTGGGAAAAGAGAAGAGGAATTTGATGTCAGCCGGGGTGATCCCTGAGATAGAGGCCTGTCTCTGATGGCATGAGCTCTAAGAGGGTCCTGGAGGATTGGTACATCCTAGAACATTCCAGTTAGCCCTCTTTTAGGGGAAACTGGCATAGGATTGATGCAGAAGGCATTTTTGATGATGGGACCAAAATTCAAGTCTCCTTGGTAGCATTCTAGGATCAACTAGATCCTAGGATCTGGTAGATTGTAGGATTCTAGTGGGTAGAGGCCAGGGGTGCTGTGAAACATCCTGCAGTGCACAGGATGGTCCCACAAGAGAGGATGATCCGGCCCAGAATGTCAGTGCTGAGCCTGAGAAACTCATCTAAGGCCTGGTCCACAACAGTAATGTGACTGTTCACTCGTGACAACTTCAGATGGTAAATGGACTTAGGATCGTATTATTTTATTTAAAAGAAAAATAAGGAGCTGGTTTTTCAGCCGGGTTCCTTTCCCCTATGCACTGGAATACCCCTGGTAGGTGTGAGCTGCATGCAATTGTGGGGATTCAGCACTGAAATCTAGGTGCTTTTGTTTTCTCCAG
Seq C2 exon
CAGCCTCGTCTTACAGCGTGACTGCAAAGAAAAAGACTTTTGTTTTGCAAAAGAAAAGCAGCTCGGTGACTCCGTCCACATCGCCACAGTTGAGTCAGATGGCAGTGGCAGTCCTTTGCCAGTGGAAGGAGTTCCTGCTAAGGGGAGGTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122085-MTERFD2:NR_028049:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF025369=mTERF=PD(28.5=45.6)
A:
NA
C2:
PF025369=mTERF=PD(20.7=43.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTTTGGGGAAGTTGGC
R:
CTCCTTCCACTGGCAAAGGAC
Band lengths:
350-1047
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)