HsaEX0041043 @ hg38
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:108779542-108785743:+
Coord C1 exon
chr13:108779542-108780052
Coord A exon
chr13:108780147-108780325
Coord C2 exon
chr13:108785635-108785743
Length
179 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCATTTTTTGTTTAGCCA
3' ss Score
5.65
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGAGGTGGCTCAGGCCTAGGCTGCAAGCAGGGAACAGGTACCAGCAAAATATGCTAGGAAGCTTCTCGCTGGGAGGCTAATATAAATGGGTGGGCCATTTGCTAGGATACAAGAGAAACTTGCCATTGGGCTGCTAGGGAAACTCGCCCAGGGACGTGCGCCCCTGGGTCTCCCACACGCCAGTGACAAGGAGACCTGGGGCTCTCTGGCAAGAACCACAAGAAGCCCCTTCTTCCTGCTGTGTCCCTCCAGGGCCCTCTACTGACAGACCCAACACCGTTCCAGCTGGTAAAGGAGGACCCTCCGGAGGCCCAGCCCCAGGATCAAGAAAACAGAGCAAAACATGGGTCGACCTGGAGTTGATCCTTAATTGATGATGGGCACAACATGGAGCCTGAAATCATTTATTTCATTTTCAAGTTTCAGGCTTTCTGACAGAGGCAAAGCACCTAGCCATAAATTGCAGAAATGCTTCATTGACCACGGATTACCATGGTGGG
Seq A exon
CCAAAGTTTGTGCCATCACAAAGGCAGTATGAGAAACAACTCCCTGGGCTTAAAATTTAGAAGAAAAATGAAGATATATTAGAATGAATTTGTGTAGTTTAAAGAATGAAAGCAAGGCATTTTTTTCAAATGTTGGGAAAGTTAGTAATCATGGAAGATTGAAGACCATGAGCTCTCAG
Seq C2 exon
GCTGGAGCCAATGTCCTTCTCCAGGATGTGAATGGAAATATCCCATTAGATTATGCTGTAGAAGGGACAGAATCCAGCTCTATCCTGTTGACCTATCTGGATGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'12-10,'12-9,13-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(0.1=0.0)
A:
PF127962=Ank_2=PD(7.4=40.0)
C2:
PF127962=Ank_2=PD(8.6=21.6)
Main Inclusion Isoform:
ENST00000356711fB4490
Main Skipping Isoform:
ENST00000356711fB20533
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACCGTTCCAGCTGGTAA
R:
GAGAAGGACATTGGCTCCAGC
Band lengths:
250-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development