HsaEX6041045 @ hg38
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:108727440-108820412:+
Coord C1 exon
chr13:108727440-108727583
Coord A exon
chr13:108785635-108785743
Coord C2 exon
chr13:108820337-108820412
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTCTTTTTATCTAGGCT
3' ss Score
9.67
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
TGTGCTCGGTATGATAATGCCTTCATTGCAGAAATTCTGATTGACAGAGGAGTCAACGTCAACCACCAGGATGAAGACTTCTGGACGCCCATGCACATTGCCTGTGCCTGCGATAACCCTGATATTGTCCTGCTTCTTGTATTA
Seq A exon
GCTGGAGCCAATGTCCTTCTCCAGGATGTGAATGGAAATATCCCATTAGATTATGCTGTAGAAGGGACAGAATCCAGCTCTATCCTGTTGACCTATCTGGATGAAAATG
Seq C2 exon
ACAAATCTGGTGAAACTTCTCCTGATGCATCAGGCAAACCCACACCTCGTGAACTGTAATGAGGAGAAGGCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.5=100)
A:
PF127962=Ank_2=PD(8.6=21.6)
C2:
PF127962=Ank_2=PD(19.5=65.4)
Main Skipping Isoform:
ENST00000356711fB31222
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCGGTATGATAATGCCT
R:
TGACGCCTTCTCCTCATTACAG
Band lengths:
219-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains