RnoEX0057172 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84857343-84894095:-
Coord C1 exon
chr16:84893952-84894095
Coord A exon
chr16:84866009-84866117
Coord C2 exon
chr16:84857343-84857467
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTGTTTTCATACAGGCT
3' ss Score
9.89
5' ss Seq
ACGGTAGCC
5' ss Score
4.01
Exon sequences
Seq C1 exon
TGTGCTCGCTATGACAATGTCTTCATCGCAGAAGTCCTCATTGACAGGGGTGTCAATGTCAACCACCAGGATGAGGACTTTTGGGCCCCAATGCACATTGCCTGTGCCTGTGACAACCCTGACATTGTCCTGTTGCTCATATTA
Seq A exon
GCTGGAGCCAACGTCCTTCTGCAAGATGTGAATGGAAATATCCCGTTAGATTACGCTGTCGAAGGGACAGAATCTAGTGCTATCCTGCTGGCCTATTTGGATGAAAACG
Seq C2 exon
GGGTGGACCTGAACTCTCTGCGCCAGATAAAGCTGCAGCGGCCCCTGAGTATGCTGACAGACGTCAGGCACTTCCTGTCTTCAGGTGGAGATGTCAACGAGAAAAATGATGACGGGGTGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.5=100)
A:
PF127962=Ank_2=PD(8.6=21.6)
C2:
PF127962=Ank_2=PU(29.9=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGAAGTCCTCATTGACA
R:
GGGTCACCCCGTCATCATTTT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]