DreEX6035121 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:7966191-8003269:+
Coord C1 exon
chr9:7966191-7966334
Coord A exon
chr9:7998157-7998265
Coord C2 exon
chr9:8003145-8003269
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCGTCTGTTTGCAGGCC
3' ss Score
10.19
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
TGCGCTCGCCATGACAATGTGTTTGCCGCTGAGATTTTGATAGAGAAAGGACTGAACGTTAACCTGCAGGATGAAGACCTCTGGACTGCCCTGCATGTGGCCTGTGCCTGCGATCATGCAGATATGGTGCTGCTTCTGCTGCTG
Seq A exon
GCCGGAGTCAATGTGCTCCTGCAGGATGTGAACGGGAACATTCCACTGGACTACACCACAGAGGGGACGGAAACCAGATACATCCTCATCAGACACCTGGAGGAGAATG
Seq C2 exon
GAGTGGACATGAGCTCTGTCCACCAGATGAAGAGCCAGCGCTGCTTCACCATGATGTCTGACGTGAAGCAGCTGGTCAGCAGCGGGGGAAGCGTCAATCAACAAAATGACGATGGGGTCACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(51.1=100)
A:
PF127962=Ank_2=PD(15.8=43.2)
C2:
PF127962=Ank_2=PU(31.5=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATGACAATGTGTTTGCC
R:
TTGTTGATTGACGCTTCCCCC
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]