GgaEX1037981 @ galGal3
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
NA
Coordinates
chr1:142397233-142437410:+
Coord C1 exon
chr1:142397233-142397376
Coord A exon
chr1:142428200-142428308
Coord C2 exon
chr1:142437286-142437410
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATTCTTGCATGTAGGCT
3' ss Score
8.1
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TGTGCTCGCTACGATAATGCATTTGCTGCAGAAATTCTGATTGACAGAGGAGTGAATGTAAATCATCAAGATGAGGATTTTTGGACATCAATGCATGTAGCCTGTGCTTGTGATAATCCTGATATTGTCCTGCTGCTGCTGCTA
Seq A exon
GCTGGAGCAAATGTACTGCTGCAAGATGTTAATGGAAACACAGCATTTGACTATGCCGTAGAAGGGACTGAATCCAGCAGCATTCTTCTCATGTACCTGGAAGAAAATG
Seq C2 exon
GTGTTGAGCTGAATTCCTTGCGCCAAATGAAGATACAGAGAGCTATGACTATGCTTACAGATGTTCGACAGCTCATATCAAGTGGAGGAAGCGTGAATCAGAAGAATGATGAAGGAGTTACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.5=100)
A:
PF127962=Ank_2=PD(8.6=21.6)
C2:
PF127962=Ank_2=PU(31.5=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCGCTACGATAATGCA
R:
TCTGATTCACGCTTCCTCCAC
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]