MmuEX0030439 @ mm9
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10322600-10369466:+
Coord C1 exon
chr8:10322600-10322743
Coord A exon
chr8:10360985-10361093
Coord C2 exon
chr8:10369342-10369466
Length
109 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTGTTTTCATCCAGGCT
3' ss Score
8.97
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
TGTGCTAGATACGACAACGTCTTCATTGCAGAAGTCCTCATTGACAGGGGCGTCAATGTCAACCATCAGGATGAGGACTTTTGGACCCCAATGCACATTGCCTGTGCCTGTGACAACCCTGACATTGTCCTGTTGCTCATATTA
Seq A exon
GCTGGAGCCAACGTCTTTCTGCAAGATGTGAATGGAAACATCCCTTTAGATTATGCCGTTGAGGGGACAGAATCTAGTGCTATCCTGCTGGCCTATCTGGATGAGAAAG
Seq C2 exon
GGGTGGACCTCAGCTCGCTGCGCCAGATAAAGCTGCAGCGACCCCTGAGTATGCTAACGGACGTCAGGCACTTCCTGTCTTCAGGCGGAGATGTCAACGAGAAAAATGATGATGGAGTGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.5=100)
A:
PF127962=Ank_2=PD(8.6=21.6)
C2:
PF127962=Ank_2=PU(29.9=61.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGTCCTCATTGACAGGG
R:
CAGGGTCACTCCATCATCATT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: