BtaEX0023493 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:87958029-87994683:+
Coord C1 exon
chr12:87958029-87958172
Coord A exon
chr12:87986038-87986146
Coord C2 exon
chr12:87994559-87994683
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCCGCTTGTAGGCT
3' ss Score
11.42
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
TGCGCTCGGTATGATAATGTCTTCATCGCAGAGATCCTGATTGACAGAGGGGCCAATGTCAACCACCAGGATGAAGACTTCTGGACACCGATGCACATTGCCTGCGCGTGTGACAACCCTGACGTTGTCCTGCTGCTTATATTA
Seq A exon
GCTGGAGCCAATGTCCTTCTCCAGGACGTCAATGGAAACATCCCACTGGATTATGCCACGGAAGGCACTGACTCGAGCTCCATCCTGCTGACCTACCTGGATGAAAATG
Seq C2 exon
GAGTGGATCTCACCTCACTGCGGCAGATGAAGCTTCAGAGACCGGTGAGCATGTTAACGGACGTCAAACACTTCCTGTCCTGTGGAGGAAACGTTAATGAGAGAAACGACGATGGCGTAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.5=100)
A:
PF127962=Ank_2=PD(8.6=21.6)
C2:
PF127962=Ank_2=PU(29.1=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCATCGCAGAGATCCTG
R:
CGCCATCGTCGTTTCTCTCAT
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development