HsaEX6041045 @ hg19
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:29822]
Coordinates
chr13:109379788-109445988:+
Coord C1 exon
chr13:109379788-109379931
Coord A exon
chr13:109437983-109438091
Coord C2 exon
chr13:109445864-109445988
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTCTTTTTATCTAGGCT
3' ss Score
9.67
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
TGTGCTCGGTATGATAATGCCTTCATTGCAGAAATTCTGATTGACAGAGGAGTCAACGTCAACCACCAGGATGAAGACTTCTGGACGCCCATGCACATTGCCTGTGCCTGCGATAACCCTGATATTGTCCTGCTTCTTGTATTA
Seq A exon
GCTGGAGCCAATGTCCTTCTCCAGGATGTGAATGGAAATATCCCATTAGATTATGCTGTAGAAGGGACAGAATCCAGCTCTATCCTGTTGACCTATCTGGATGAAAATG
Seq C2 exon
GAGTGGATTTGACCTCACTGCGCCAGATGAAGCTTCAGAGACCAATGAGTATGTTAACAGATGTCAAACACTTCTTATCATCTGGAGGAAATGTCAATGAGAAAAACGATGAAGGAGTAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'4-9,'4-8,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.5=100)
A:
PF127962=Ank_2=PD(8.6=21.6)
C2:
PF127962=Ank_2=PD(3.2=9.5),PF127962=Ank_2=PU(29.9=61.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCGGTATGATAATGCCT
R:
TCTCATTGACATTTCCTCCAGATGA
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)