HsaEX0041217 @ hg19
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52548836-52556493:-
Coord C1 exon
chr15:52556387-52556493
Coord A exon
chr15:52553059-52553324
Coord C2 exon
chr15:52548836-52548917
Length
266 bp
Sequences
Splice sites
3' ss Seq
GCTTGTGCTTGTTTTTGAAGGAG
3' ss Score
6.51
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTTTCAAGGAGGATTTTCAGATGGACGTTTTTAAAATCCTGGCAGCCATCCTACATCTGGGCAATGTGCAGATCACCGCGGTGGGCAACGAGAGGTCCTCAGTTAGT
Seq A exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTTGCTCAGTGGCTGTGCAATCGCAAAATCGTCACAAGCTCTGAGACGGTGGTAAAACCCATGACCAGGCCTCAGGCTGTCAACGCCAGGGATGCACTGGCCAAAAAGATCTATGCTCACCTGTTCGACTTCATTGTGGAGAGAATTAACCAAGCGTTGCAGTTTTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq C2 exon
TTTTGAAACCTTTGATGTGAACAGCTTTGAACAATTTTGCATCAATTACGCTAATGAAAAACTGCAACAACAGTTTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.2=100),PF114633=R-HINP1I=FE(28.0=100)
A:
PF0006316=Myosin_head=FE(26.2=100),PF114633=R-HINP1I=PD(57.6=94.7)
C2:
PF0006316=Myosin_head=PD(0.7=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAAGGAGGATTTTCAGATGGAC
R:
CTGTTGTTGCAGTTTTTCATTAGCG
Band lengths:
180-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)