HsaEX0041217 @ hg38
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52256639-52264296:-
Coord C1 exon
chr15:52264190-52264296
Coord A exon
chr15:52260862-52261127
Coord C2 exon
chr15:52256639-52256720
Length
266 bp
Sequences
Splice sites
3' ss Seq
GCTTGTGCTTGTTTTTGAAGGAG
3' ss Score
6.51
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTTTCAAGGAGGATTTTCAGATGGACGTTTTTAAAATCCTGGCAGCCATCCTACATCTGGGCAATGTGCAGATCACCGCGGTGGGCAACGAGAGGTCCTCAGTTAGT
Seq A exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTTGCTCAGTGGCTGTGCAATCGCAAAATCGTCACAAGCTCTGAGACGGTGGTAAAACCCATGACCAGGCCTCAGGCTGTCAACGCCAGGGATGCACTGGCCAAAAAGATCTATGCTCACCTGTTCGACTTCATTGTGGAGAGAATTAACCAAGCGTTGCAGTTTTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq C2 exon
TTTTGAAACCTTTGATGTGAACAGCTTTGAACAATTTTGCATCAATTACGCTAATGAAAAACTGCAACAACAGTTTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.001 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
PF0006316=Myosin_head=FE(20.9=100)
C2:
PF0006316=Myosin_head=PD(0.6=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAAGGAGGATTTTCAGATGGAC
R:
CTGTTGTTGCAGTTTTTCATTAGCG
Band lengths:
180-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development