HsaEX0042215 @ hg38
Exon Skipping
Gene
ENSG00000166579 | NDEL1
Description
nudE neurodevelopment protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr17:8444260-8445864:+
Coord C1 exon
chr17:8444260-8444357
Coord A exon
chr17:8444954-8445040
Coord C2 exon
chr17:8445711-8445864
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTCCTATTTTGGTTAACAGAGT
3' ss Score
7.28
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCTTTCTTGATCATGGATGGTGAAGATATACCAGATTTTTCAAGTTTAAAGGAGGAAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAAAG
Seq A exon
AGTTTACTAAGTCTTATCAAACCTTTTACTGCCCTTTCATTATTATCACCGAAGTCAGTTATTCTATTGTGCCAGTGGATATGAAAG
Seq C2 exon
CTTCCAGGAAGCTCGGGATGAGCTAGTTGAATTCCAGGAAGGAAGCAGAGAATTAGAAGCAGAGTTGGAGGCACAATTAGTACAGGCTGAACAAAGAAATAGAGACTTGCAGGCTGATAACCAAAGACTGAAATATGAAGTGGAGGCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579_MULTIEX1-2/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PU(34.2=93.1)
A:
NA
C2:
PF079267=TPR_MLP1_2=FE(64.6=100),PF0218313=HALZ=PU(75.0=40.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTGATCATGGATGGTGA
R:
TTGTGCCTCCAACTCTGCTTC
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development