HsaEX0042369 @ hg38
Exon Skipping
Gene
ENSG00000078114 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr10:20812769-20828634:-
Coord C1 exon
chr10:20828530-20828634
Coord A exon
chr10:20826447-20826539
Coord C2 exon
chr10:20812769-20812940
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTTATAATAAAGGTA
3' ss Score
6.17
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCG
Seq A exon
GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCA
Seq C2 exon
GTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGGCTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078114_MULTIEX1-35/44=34-42
Average complexity
C3
Mappability confidence:
80%=97=83%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.569 C2=0.455
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(64.0=45.7)
A:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(55.2=51.6)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Skipping Isoform:
ENST00000417816fB4616
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- HsaALTD0004262-1/2
- HsaALTD0004262-2/2
- HsaEX0042356
- HsaEX0042362
- HsaEX0042363
- HsaEX0042364
- HsaEX0042365
- HsaEX0042366
- HsaEX0042367
- HsaEX0042368
- HsaEX0042370
- HsaEX0042371
- HsaEX0042372
- HsaEX0042373
- HsaEX0042374
- HsaEX0042375
- HsaEX0042376
- HsaEX0042377
- HsaEX0042378
- HsaEX1025426
- HsaEX1025428
- HsaEX1025430
- HsaEX1025437
- HsaEX1025438
- HsaEX6087794
- HsaINT0112263
- HsaINT0112264
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCAACAAAACATTAGTGCG
R:
GTCTCCTGTCCATCTCCACGA
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development