RnoEX0059040 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84165901-84299839:-
Coord C1 exon
chr17:84299732-84299839
Coord A exon
chr17:84177979-84178071
Coord C2 exon
chr17:84165901-84166072
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCCTCACTGTGAAGGTA
3' ss Score
7.95
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCAAGTACAAACGAGATTTCGAAGAGAGCAGAGGCAGAGGATTCAGCATCGTCACGGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAC
Seq A exon
GTATCTTATAAGGAGGAAGTAAGAGCTGGCACAGCCGTAAGGAATACTCCAGAGATTGAACGAGTGAAGAAAAACCAGCACAATATTAGTTCA
Seq C2 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452_MULTIEX1-24/28=C1-C2
Average complexity
C3
Mappability confidence:
82%=100=83%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=0.952 C2=0.416
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(66.7=44.4)
A:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(84.2=51.6)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGACCCAGGAGCAGATC
R:
CACAACATGAGGCTGTACCCC
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]