RnoEX0059027 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84165901-84299839:-
Coord C1 exon
chr17:84299732-84299839
Coord A exon
chr17:84219927-84220028
Coord C2 exon
chr17:84165901-84166072
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCTCATTATTCACTTTAGGCA
3' ss Score
7.92
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCAAGTACAAACGAGATTTCGAAGAGAGCAGAGGCAGAGGATTCAGCATCGTCACGGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAC
Seq A exon
GCAGAATACAAGAAAGGACAAGGCATCGTGAATAAAGAACCTTCTGTAATTGGGAGACCAGATTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAG
Seq C2 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452_MULTIEX1-12/28=C1-C2
Average complexity
C3
Mappability confidence:
94%=100=94%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=0.412 C2=0.416
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(66.7=44.4)
A:
PF0088013=Nebulin=PU(55.2=47.1)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGAGCAGAGGCAGAGGA
R:
CCCAGGTCTTCTATCCATCTCCA
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]