RnoEX0059024 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84165901-84299839:-
Coord C1 exon
chr17:84299732-84299839
Coord A exon
chr17:84298278-84298603
Coord C2 exon
chr17:84165901-84166072
Length
326 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTTTCATTTAAAGAGA
3' ss Score
7.76
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCAAGTACAAACGAGATTTCGAAGAGAGCAGAGGCAGAGGATTCAGCATCGTCACGGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAC
Seq A exon
AGACAGAGTTGACTTTTAGGAGCTGATGCTATTCATTGGATCCCATGGTTTTTCTCATGACTTGACTGCCTATAGCGAATAGTAAGGACAGTCACCTCCATTCTTCTCTCATCCGTCCTTCCCTCAAGTCAAAACCCATTCTTACTTTACAAACACAAACCAGAGATGCTCTTCAATGACAGTTCTGCTCAGAGTTTTAAAATGCTATGCCAGCTGCAGTTCCCAATGCTTGACTAGCATAGACATTTATTTCTGGAAGAACTAAGCCAACTCTACGTGAGACCGTCCATGTGAAGGATAGCACGGGGGTTACAGTTCACTCAAAG
Seq C2 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452_MULTIEX1-1/28=C1-C2
Average complexity
C1
Mappability confidence:
97%=100=97%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=1.000 C2=0.416
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(66.7=44.4)
A:
PF0088013=Nebulin=PD(5.3=25.0)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Main Inclusion Isoform:
ENSRNOT00000075983fB9514
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAAGAGAGCAGAGGCAGA
R:
CAACAATGATCCCAGGTCTTCT
Band lengths:
262-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]