RnoEX0059035 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84165901-84299839:-
Coord C1 exon
chr17:84299732-84299839
Coord A exon
chr17:84298114-84298191
Coord C2 exon
chr17:84165901-84166072
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCACCCAATTTATCCTTAGCTG
3' ss Score
6.3
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCAAGTACAAACGAGATTTCGAAGAGAGCAGAGGCAGAGGATTCAGCATCGTCACGGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAC
Seq A exon
CTGGAGTATACTTTACATGCAATGCCAGAGGTCGTTTGCAGATCCATTCTTAACTGTGCAAAACCCCTTATGATGCAG
Seq C2 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452_MULTIEX1-2/28=C1-C2
Average complexity
C1
Mappability confidence:
96%=100=96%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=0.000 C2=0.416
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(66.7=44.4)
A:
PF0088013=Nebulin=PD(21.7=19.2)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Main Inclusion Isoform:
ENSRNOT00000075983fB9516
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGACCCAGGAGCAGATC
R:
CACAACATGAGGCTGTACCCC
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]