HsaEX0043713 @ hg19
Exon Skipping
Gene
ENSG00000185551 | NR2F2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:HGNC Symbol;Acc:7976]
Coordinates
chr15:96869157-96877832:+
Coord C1 exon
chr15:96869157-96869581
Coord A exon
chr15:96874180-96875776
Coord C2 exon
chr15:96877305-96877832
Length
1597 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCTCTGCGCACGAAGGAT
3' ss Score
5.59
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATGAGAGACAAGGATCACTCCAGACATCTCCTACCTACGGTTTGGGGTTTTTTTTCTTAAAGGCGAGGCTTGCATTCCTCAGCAGCTATGTACAAAGCTCCCTGAAACCTTGTCTCTCTAAAGTTAGTGTGCAGGGTTTTCCAAGGCTGAGAGAGCCTAATACATGGGGAAGCACTTCCTTGAGGTGGAAGATCTCTCCCTTCACCTTTCCTCTTTTTCCCTGCAGGCTAGTGCCTACTTTTTATCAGTTTGCACAATCGCTTAGATAAACACCGAGGAGGAGATTCTCTTTAATTATCAAAGACACATCTTTTCAGGGGGCCAACAAAGCATTTATTTCACCCGCCAAACTAAAGGAGAGTTATTCCAGTTTAGGAGGAAGATGCAAGCGGTTTGGGACCTTGAACAAGGCAAATATGGTTTTG
Seq A exon
GATGTGCTTCTAGGTGGTGATCTGCCCTCCTCTCTCTCTTTTATCATTTCTCCCCCGCCGCCGGCGAGTTGACTCTTTCCCTATGTGTGTGAGGCGGCGGCGGCAGCAGCAGCAGCAGCGGCTCCGGCGGCGGCAGCAGCGGCAGCAGCGACTTCAGCGGCGGCGGCGGCGCTAGACGCAGCGGCTCCGGGCCCGACCCGGCGGCTTCGGCGGCGGCTCCGGCGGCAGCGGCGGCCCGGGCGGCCCGCAGGGAACGGCGAGCGGCCTCCACCCAGCGACTGCGGGCGGCGGCGGCCGGAGAGAGCGAGGCGCGCGCCGGACGCCCGGGGCAGGCGGCGGCGGCGGCGGCCCAGCGCCAGGACGACGCCGCGCAGCGCCCGACGCGGACCACTTTCATGCTGATTCCCCCGGACCCGGGCAGCGCTCCGGCCACTCCGCGGGCCGCCGGCCTCCGCCCCGGCCTGCCTGGCTCCCTGGGCGCGCCCGCACCCGGCGCCTCCGATCTCCTAGTCCTCCTGATTTCGATGGCTTTCCTGAATGGCTGACTGTGGGCTGCCCTGGACTTGGCCCCCGGACAGTCGCCTCTCCTCCTCCTCTACCTCCTCCTTCACCACCACCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCAACTCCTCGGCTGCACACCAGCTCTAAGAGCGAGAGTGAACGAGAGAGGGAGGGAGAGAGTGAGAGCGAGCGAGATCTTTGGAGAGATTTTTTTTTTTGCCTCCTACTTCTGTCTTGAAGCCAGACAATCGACTTCAGCTCTCCCTCCCCTCCCTCTTTCTCCACGTTCTGCTCCCACTCGCTCTCCTGTCCCCTTCCCCTCCCCTCCCGGCGGAAAGCCCCCCGAAACCAACAAAGCTGAGCCGAGAGAAACAAACAAAACAAACACACCGGGCCAGACAAGCCATCGACAAAACTTTGCAAAAGCAAAAACAAAAAAGGAAAAACTAACCAACCTCAACCAACCAGCCCCCGAGCCACCCGGGGCGCCCTCCCGCGCCCTCTTGCACCCTCGCACACACAAAAGGCGGCGCGCCGGAGCCCGAGACCCGGGGAGCCGCCGCCGCCCCGCCGCCGCCCGCAGCCAGGGGAGCAGGAAGTCCGGACGCAGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCACAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCCGGCCCGCCGCCCGGCGCCCCGCACACGCCACAGACGCCCGGCCAAGGGGGCCCAGCCAGCACGCCAGCCCAGACGGCGGCCGGTGGCCAGGGCGGCCCTGGCGGCCCGGGTAGCGACAAGCAGCAGCAGCAGCAACACATCGAGTGCGTGGTGTGCGGAGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCATCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq C2 exon
CGGTGCAGAGGGGCAGGATGCCGCCGACCCAGCCGACCCACGGGCAGTTCGCGCTGACCAACGGGGATCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGTTGCGCGCGGAGCCCTATCCCACGTCGCGCTTCGGCAGCCAATGCATGCAGCCCAACAACATCATGGGTATCGAGAACATTTGCGAACTGGCCGCGAGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCCGACCTGCAGATCACGGACCAGGTGGCCCTGCTTCGCCTCACCTGGAGCGAGCTGTTTGTGTTGAATGCGGCGCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTGCATGCTTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCGCTGCACGTTGACTCAGCCGAGTACAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185551_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.491 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
PF0010513=zf-C4=WD(100=47.3)
C2:
PF0010425=Hormone_recep=PU(67.3=77.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACTTCCTTGAGGTGGA
R:
GACAGGTACGAGTGGCAGTTG
Band lengths:
351-1948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)