GgaEX0004453 @ galGal3
Exon Skipping
Gene
ENSGALG00000003406 | F1NSP3_CHICK
Description
NA
Coordinates
chr8:5352993-5355362:+
Coord C1 exon
chr8:5352993-5353137
Coord A exon
chr8:5353667-5353846
Coord C2 exon
chr8:5355202-5355362
Length
180 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCCTCACCTCCCTAGGGA
3' ss Score
10.12
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
CTCAATGTGCTCAACAATGTCAGCAGCTCGGAGGACATCAAGCCCTTGCCAGGTCTACCAGGGATTGGGAACATGAATTATCCATCCACAAGCCCAGGTTCTTTAGCCAAACACATCTGTGCCATCTGTGGGGACAGGTCTTCAG
Seq A exon
GGAAGCACTATGGGGTGTACAGCTGCGAGGGCTGCAAGGGCTTCTTTAAGAGGACCATCCGGAAAGACCTGATCTACACCTGCCGTGACAACAAGGACTGCCTCATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTCGCCATGGGGATGAAGAGGGAAG
Seq C2 exon
CCGTGCAGGAGGAGAGGCAGCGGAGCAGGGAGCGCAGTGAGAACGAAGCTGAGTCCACGAGCGGCGGCAGCGAGGACATGCCTGTGGAGAGGATCCTGGAAGCCGAGCTGGCAGTCGAACCCAAGACGGAGGCATACAGCGACGTGAACACGGAGAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003406-'3-4,'3-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.611
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(29.6=69.4),PF0010513=zf-C4=PU(15.7=22.4)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(6.2=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGCCCTTGCCAGGTCTA
R:
GTATGCCTCCGTCTTGGGTTC
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]