MmuEX0040833 @ mm9
Exon Skipping
Gene
ENSMUSG00000015843 | Rxrg
Description
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
Coordinates
chr1:169555059-169561253:+
Coord C1 exon
chr1:169555059-169555203
Coord A exon
chr1:169557423-169557602
Coord C2 exon
chr1:169561093-169561253
Length
180 bp
Sequences
Splice sites
3' ss Seq
GGTTGTTCTCTCGTAACCAGGGA
3' ss Score
7.15
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTAAATGTGGTCAACAGTGTCAGCAGCTCTGAGGACATCAAGCCCTTACCAGGTCTGCCTGGGATTGGAAATATGAACTACCCATCCACCAGCCCTGGGTCTCTGGTGAAACACATCTGTGCCATCTGTGGGGACAGATCCTCAG
Seq A exon
GGAAGCACTACGGTGTGTACAGCTGTGAAGGTTGCAAAGGCTTCTTCAAAAGGACCATCAGGAAAGATCTCATCTACACCTGTCGGGATAACAAAGATTGTCTCATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGTCGCTACCAGAAGTGCCTGGTCATGGGCATGAAGCGGGAAG
Seq C2 exon
CTGTGCAAGAAGAAAGGCAGAGGAGCCGAGAGCGAGCAGAGAGTGAGGCAGAATGTGCCAGTAGTAGCCACGAAGACATGCCCGTGGAGAGGATTCTAGAAGCCGAACTTGCTGTGGAACCAAAGACAGAATCCTACGGTGACATGAACGTGGAGAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015843-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.000 C2=0.519
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(30.6=69.4),PF0010513=zf-C4=PU(15.7=22.4)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(5.2=18.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGCTCTGAGGACATCA
R:
TTGGTTCCACAGCAAGTTCGG
Band lengths:
249-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: