BtaEX6013731 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016801 | RXRG
Description
Bos taurus retinoid X receptor, gamma (RXRG), mRNA. [Source:RefSeq mRNA;Acc:NM_001075408]
Coordinates
chr3:3614981-3626468:+
Coord C1 exon
chr3:3614981-3615125
Coord A exon
chr3:3617405-3617584
Coord C2 exon
chr3:3626308-3626468
Length
180 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTTCTCTTTGGCCAGGAA
3' ss Score
7.94
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTAAATGTGGTCAACAGTGTCAGCATTTCAGAGGACATCAAGCCCTTACCAGGGCTTCCTGGCATTGGAAACATGAACTACCCATCCACCAGCCCGGGATCTCTGGTTAAGCACATCTGTGCCATCTGTGGGGACAGATCCTCAG
Seq A exon
GAAAGCACTACGGTGTGTACAGTTGTGAAGGCTGCAAAGGGTTCTTCAAGAGAACCATAAGGAAAGACCTCATCTACACTTGTCGGGATAACAAAGACTGCCTCATTGACAAGCGCCAGCGCAACCGCTGTCAGTACTGCCGCTATCAGAAGTGCCTGGTCATGGGCATGAAGAGGGAAG
Seq C2 exon
CTGTGCAGGAAGAAAGGCAGAGAAGCCGGGAGCGGGCTGAAAGTGAGGCAGAGTGTGCCAACAGTGGCCATGAAGATATGCCCGTGGAGAGGATTCTGGAAGCTGAACTTGCTGTTGAACCAAAGACAGAATCCTATGGTGACATGAACACGGAGAATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016801-'6-6,'6-2,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.000 C2=0.574
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(30.6=69.4),PF0010513=zf-C4=PU(15.7=22.4)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(5.7=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGTCAACAGTGTCAGCA
R:
TTCCAGAATCCTCTCCACGGG
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]