DreEX0063849 @ danRer10
Exon Skipping
Gene
ENSDARG00000005593 | rxrga
Description
retinoid x receptor, gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-36]
Coordinates
chr2:21105620-21109861:+
Coord C1 exon
chr2:21105620-21105758
Coord A exon
chr2:21107694-21107873
Coord C2 exon
chr2:21109701-21109861
Length
180 bp
Sequences
Splice sites
3' ss Seq
GCAACTTTCTCTACCAACAGGGA
3' ss Score
8.61
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGAACTCTCTGAACAGTGTTAGCAGCTCAGAGGACATTAAACCTCCTCCAGGACTGGCAGGACTGGGCAGTTACCCTTGCGGCAGCCCCGGGTCCCTCTCCAAACACATCTGTGCCATTTGTGGAGACCGATCCTCAG
Seq A exon
GGAAACATTATGGTGTTTACAGCTGTGAAGGATGCAAAGGCTTCTTCAAGAGAACCATCCGTAAAGACCTGACGTACACTTGTCGAGACAATAAGGACTGCCAGATAGACAAACGCCAGCGAAACCGCTGCCAGTACTGTCGCTATCAGAAGTGTCTCGCCATGGGCATGAAGAGAGAGG
Seq C2 exon
CGGTCCAGGAGGAGAGGCAGCGCGGTCGGGAGAGGAGTGATAATGAAGTGGACTCCAGCAGCAGCTTCAATGAAGAGATGCCGGTGGAGAAGATCCTGGACGCTGAGCTGGCAGTGGAGCCCAAGACAGAAGCTTACATGGAGTCAAGCATGAGCAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005593-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTAGCAGCTCAGAGGACA
R:
CTTCTGTCTTGGGCTCCACTG
Band lengths:
256-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]