RnoEX0077647 @ rn6
Exon Skipping
Gene
ENSRNOG00000004537 | Rxrg
Description
retinoid X receptor gamma [Source:RGD Symbol;Acc:620046]
Coordinates
chr13:85852559-85858160:+
Coord C1 exon
chr13:85852559-85852703
Coord A exon
chr13:85854898-85855077
Coord C2 exon
chr13:85858000-85858160
Length
180 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTCTCTGTTAACCAGGAA
3' ss Score
7
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTCAATGTGGTCAACAGTGTCAGCAGCTCCGAGGACATCAAGCCCTTACCAGGTCTGCCTGGGATCGGAAATATGAACTACCCATCCACCAGCCCCGGGTCTCTGGTGAAACACATCTGTGCCATCTGTGGGGACAGATCCTCAG
Seq A exon
GAAAGCACTACGGGGTGTATAGCTGTGAAGGCTGCAAAGGCTTCTTCAAGAGAACCATAAGGAAAGACCTCATCTACACGTGTCGGGATAACAAAGACTGTCTCATCGACAAGCGCCAGCGCAACCGTTGCCAGTACTGTCGTTACCAGAAGTGCCTGGTCATGGGCATGAAGAGGGAAG
Seq C2 exon
CTGTGCAAGAAGAAAGGCAGAGGAGCCGGGAGCGAGCAGAGAGTGAGGCAGAATGTGCCAGTACTGGCCATGAAGACATGCCGGTGGAGAGGATTCTAGAAGCTGAGCTTGCTGTGGAACCAAAGACCGAATCCTACGGCGACATGAGTGTGGAGAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004537_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(30.6=69.4),PF0010513=zf-C4=PU(15.7=22.4)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(28.7=42.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGGACATCAAGCCCTTA
R:
TTCGGTCTTTGGTTCCACAGC
Band lengths:
249-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]