HsaEX0044295 @ hg19
Exon Skipping
Gene
ENSG00000095319 | NUP188
Description
nucleoporin 188kDa [Source:HGNC Symbol;Acc:17859]
Coordinates
chr9:131709978-131711522:+
Coord C1 exon
chr9:131709978-131710030
Coord A exon
chr9:131710781-131710907
Coord C2 exon
chr9:131711468-131711522
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGCGCCTTCTATTTCACAGATG
3' ss Score
7.91
5' ss Seq
AAGGTCTTC
5' ss Score
0.45
Exon sequences
Seq C1 exon
AGGGCGAGCGGGCGCGCGAAGATGGCGGCGGCCGCCGGCGGGCCGTGTGTGAG
Seq A exon
ATGACTCAGAAGTCCGGCTCAGAGCTAGCCAAGTGATAAAGAGAGCCTTCAAGCTGAAGTCTGCGTACCTCCAGTGCTATAACCAGACCACCACGCCTCCTTCTGTCTTCCACATTGCAGCTCGAAG
Seq C2 exon
GAGCAGTAGAGAACTGTGGACTATTCTGCTTGGAAGGTCAGCTCTGAGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095319-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=PU(0.1=0.0)
A:
NO
C2:
PF118943=DUF3414=PU(4.8=94.7),PF104874=Nup188=PU(0.3=10.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)