HsaEX0044295 @ hg38
Exon Skipping
Gene
ENSG00000095319 | NUP188
Description
nucleoporin 188 [Source:HGNC Symbol;Acc:HGNC:17859]
Coordinates
chr9:128947699-128949243:+
Coord C1 exon
chr9:128947699-128947751
Coord A exon
chr9:128948502-128948628
Coord C2 exon
chr9:128949189-128949243
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGCGCCTTCTATTTCACAGATG
3' ss Score
7.91
5' ss Seq
AAGGTCTTC
5' ss Score
0.45
Exon sequences
Seq C1 exon
AGGGCGAGCGGGCGCGCGAAGATGGCGGCGGCCGCCGGCGGGCCGTGTGTGAG
Seq A exon
ATGACTCAGAAGTCCGGCTCAGAGCTAGCCAAGTGATAAAGAGAGCCTTCAAGCTGAAGTCTGCGTACCTCCAGTGCTATAACCAGACCACCACGCCTCCTTCTGTCTTCCACATTGCAGCTCGAAG
Seq C2 exon
GAGCAGTAGAGAACTGTGGACTATTCTGCTTGGAAGGTCAGCTCTGAGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095319_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF104874=Nup188=PU(0.2=10.5)
Main Inclusion Isoform:
ENST00000372577fB4820
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development