HsaEX0044304 @ hg19
Exon Skipping
Gene
ENSG00000095319 | NUP188
Description
nucleoporin 188kDa [Source:HGNC Symbol;Acc:17859]
Coordinates
chr9:131757135-131757793:+
Coord C1 exon
chr9:131757135-131757202
Coord A exon
chr9:131757383-131757507
Coord C2 exon
chr9:131757598-131757793
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATGGCATTTATGATTGTCAGAAA
3' ss Score
1.53
5' ss Seq
AAGGTCGTT
5' ss Score
1.09
Exon sequences
Seq C1 exon
CCCAGCATCCTGGAAACCTGTGCCCTAATCATGAAGATAATTTGCTTGGAGATATACTATGTAGTAAA
Seq A exon
AAAGAGTTATTGTGAAGCAAACTCCATGCAACTGGGATTTTATGGAGGAGGAATCCTGGAAAGGCCTCAGCCTAACCCACACGTTGGAGGTGTCCTGGAGCCGTCTGCCTTTAAGCCCATGCAAG
Seq C2 exon
GGGTTCATTAGACCAGTCATTAAAGGATACACTGAAGAAATTTTCCATCGAGAAACGCTTTGCCTACTGGTCAGGGTATGTCAAGTCATTGGCAGTTCACGTGGCCGAAACAGAAGGCAGCAGCTGCACCTCCTTGTTAGAGTACCAGATGCTGGTGTCCGCCTGGAGGATGCTTCTCATCATTGCCACCACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095319-'37-42,'37-40,39-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.093 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(4.5=100)
A:
PF118943=DUF3414=PD(1.2=14.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAACCTGTGCCCTAA
R:
GATGAGAAGCATCCTCCAGGC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)